MolNFT v1 · #12999 · protein

GDP-bound YPT7P at 1.35 a resolution

1KY3 · GTP-binding protein YPT7P: “GDP-bound YPT7P at 1.35 a resolution”. X-ray diffraction, 2 ligands (GDP, MG). MolNFT v1 #12999 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1KY3
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GTP-binding protein YPT7P
UniProt: P32939
Ligands: GDP, MG

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GTP-binding protein YPT7P	protein	162	35% helix, 23% strand	P32939

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

1KY3 · GDP-bound YPT7P at 1.35 a resolution · the same entry in another collection · chain A against A, TM-score 1.00
P32939 · AlphaFold monomer V2.0 prediction for YPT/RAB-type GTPase YPT7 (P32939) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32939
Elsewhere: RCSB PDB 1KY3 · PDBe 1KY3 · UniProt P32939

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