MolNFT v1 · #129770 · protein
Crystal structure of glycoprotein VI in complex with collagen-peptide (GPO)3
5OU9: “Crystal structure of glycoprotein VI in complex with collagen-peptide (GPO)3”. X-ray diffraction, 2 ligands (NAG, CL). MolNFT v1 #129770 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OU9
- Type
- protein
- Length
- 411 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9HCN6
- Ligands
- NAG, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 179 | — | Q9HCN6 |
| B | — | protein | 169 | — | Q9HCN6 |
| C, D, E | — | protein | 21 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
- CL · Chloride ion · ion · chains B
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OU9 · Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)3 · the same entry in another collection · chain B against B, TM-score 1.00
- Q9HCN6 · AlphaFold monomer V2.0 prediction for platelet glycoprotein VI (Q9HCN6) · a predicted model of the same protein · chain B against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HCN6
- Elsewhere: RCSB PDB 5OU9 · PDBe 5OU9 · UniProt Q9HCN6
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