MolNFT v1 · #129740 · protein
Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens C58 in complex with noroctopinic acid.
5OTC: “Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens C58 in complex with…”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #129740 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OTC
- Type
- protein
- Length
- 514 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P35120
- Ligands
- CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 257 | — | P35120 |
| B | — | protein | 257 | — | P35120 |
Ligands and binding sites
- CL · Chloride ion · ion · 11 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P35120 · AlphaFold monomer V2.0 prediction for nopaline-binding periplasmic protein (P35120) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35120
- Elsewhere: RCSB PDB 5OTC · PDBe 5OTC · UniProt P35120
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