MolNFT v1 · #129629 · protein
Crystal structure of the groel mutant A109C in complex with groes and ADP BEF2
5OPX: “Crystal structure of the groel mutant A109C in complex with groes and ADP BEF2”. X-ray diffraction, 4 ligands (ADP, BEF, MG). MolNFT v1 #129629 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OPX
- Type
- protein
- Length
- 8,571 residues
- Chains
- 28
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A6F5, P0A6F9
- Ligands
- ADP, BEF, MG, K
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | — | protein | 520 | — | P0A6F5 |
| 1, 2, S, T, X, Y, Z | — | protein | 92 | — | P0A6F9 |
| O | — | protein | 93 | — | P0A6F9 |
| P | — | protein | 94 | — | P0A6F9 |
| Q | — | protein | 90 | — | P0A6F9 |
| R | — | protein | 92 | — | P0A6F9 |
| U | — | protein | 92 | — | P0A6F9 |
| V, W | — | protein | 93 | — | P0A6F9 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 14 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N
- BEF · Beryllium trifluoride ion · ligand · 14 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N
- MG · Magnesium ion · metal · 14 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N
- K · Potassium ion · metal · 14 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OPX · Crystal structure of the GroEL mutant A109C in complex with GroES and ADP BeF2 · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6F5
- Every structure of UniProt P0A6F9
- Elsewhere: RCSB PDB 5OPX · PDBe 5OPX · UniProt P0A6F5 · UniProt P0A6F9
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