MolNFT v1 · #129570 · protein
Streptomyces PAC13 (H42Q) with uridine
5OO8 · Putative CUPIN_2 domain-containing isomerase: “Streptomyces PAC13 (H42Q) with uridine”. X-ray diffraction, 1 ligand (URI), 1 pocket (best druggability 0.61). MolNFT v1 #129570 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5OO8
- Type
- protein
- Length
- 120 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative CUPIN_2 domain-containing isomerase
- UniProt
- E2EKP5
- Ligands
- URI
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative CUPIN_2 domain-containing isomerase | protein | 120 | 5% helix, 58% strand | E2EKP5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.61 | 0.87 | 19 | URI |
Compared structures
- 5OO8 · Streptomyces PAC13 (H42Q) with uridine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E2EKP5
- Elsewhere: RCSB PDB 5OO8 · PDBe 5OO8 · UniProt E2EKP5
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