MolNFT v1 · #129552 · protein
ALZHEIMER'S amyloid-beta peptide fragment 29-40 in complex with CD- substituted thermolysin
5ONQ: “ALZHEIMER'S amyloid-beta peptide fragment 29-40 in complex with CD- substituted thermolysin”. X-ray diffraction, 2 ligands (CD, CA). MolNFT v1 #129552 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ONQ
- Type
- protein
- Length
- 321 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P43133
- Ligands
- CD, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 316 | — | P43133 |
| B | — | protein | 5 | — | — |
Ligands and binding sites
- CD · Cadmium ion · metal · 4 copies · chains A, B
- CA · Calcium ion · metal · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ONQ · Alzheimer's Amyloid-Beta Peptide Fragment 29-40 in Complex with Cd-substituted Thermolysin · the same entry in another collection · chain A against A, TM-score 1.00
- P43133 · AlphaFold monomer V2.0 prediction for thermolysin (P43133) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P43133
- Elsewhere: RCSB PDB 5ONQ · PDBe 5ONQ · UniProt P43133
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