MolNFT v1 · #129482 · protein
Rhamnogalacturonan lyase
5OLR: “Rhamnogalacturonan lyase”. X-ray diffraction, 4 ligands (RAM, ADA, CA). MolNFT v1 #129482 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OLR
- Type
- protein
- Length
- 1,276 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A139KMS2
- Ligands
- RAM, ADA, CA, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 425 | — | A0A139KMS2 |
| C | — | protein | 426 | — | A0A139KMS2 |
Ligands and binding sites
- RAM · alpha-L-rhamnopyranose · sugar · 6 copies · chains A, B, C
- ADA · alpha-D-galactopyranuronic acid · sugar · 3 copies · chains A, B, C
- CA · Calcium ion · metal · 6 copies · chains A, B, C
- PO4 · Phosphate ion · ion · 3 copies · chains A, B, C
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OLR · Rhamnogalacturonan lyase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A139KMS2
- Elsewhere: RCSB PDB 5OLR · PDBe 5OLR · UniProt A0A139KMS2
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