MolNFT v1 · #12943 · protein
Structure analysis ALGQ2, a MACROMOLECULE(ALGINATE)-binding periplasmic protein of sphingomonas sp. A1.
1KWH · Macromolecule-binding periplasmic protein: “Structure analysis ALGQ2, a MACROMOLECULE(ALGINATE)-binding periplasmic protein of sphingomonas sp. A1.”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.69). MolNFT v1…
- PDB
- 1KWH
- Type
- protein
- Length
- 492 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Macromolecule-binding periplasmic protein
- UniProt
- Q9KWT5
- Ligands
- CA
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Macromolecule-binding periplasmic protein | protein | 492 | 45% helix, 15% strand | Q9KWT5 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 584 | 0.69 | 0.78 | 63 | empty |
| 2 | 75 | 0.35 | 0.76 | 19 | empty |
| 3 | 72 | 0.32 | 0.74 | 14 | empty |
Compared structures
- 1KWH · Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KWT5
- Elsewhere: RCSB PDB 1KWH · PDBe 1KWH · UniProt Q9KWT5
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