MolNFT v1 · #129375 · protein + DNA + RNA
Structure of an RNA polymerase II-dsif transcription elongation complex
5OIK: “Structure of an RNA polymerase II-dsif transcription elongation complex”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #129375 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OIK
- Type
- protein + DNA + RNA
- Length
- 4,610 residues
- Chains
- 17
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A5PJW8, Q3T0Q3, Q1JQ91, Q2T9T3, F2Z4C9, Q5E9B8, F2Z4H3, Q32P73, Q32P78, Q32P79, Q3ZBC0, P63272, O00267
- Ligands
- ZN, MG
Structure
electron microscopy · 17 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1421 | — | — |
| B | — | protein | 1147 | — | A5PJW8 |
| C | — | protein | 259 | — | Q3T0Q3 |
| D | — | protein | 128 | — | Q1JQ91 |
| E | — | protein | 209 | — | Q2T9T3 |
| F | — | protein | 82 | — | F2Z4C9 |
| G | — | protein | 171 | — | Q5E9B8 |
| H | — | protein | 148 | — | F2Z4H3 |
| I | — | protein | 117 | — | Q32P73 |
| J | — | protein | 67 | — | Q32P78 |
| K | — | protein | 115 | — | Q32P79 |
| L | — | protein | 45 | — | Q3ZBC0 |
| N | — | dna | 34 | — | — |
| P | — | rna | 20 | — | — |
| T | — | dna | 43 | — | — |
| Y | — | protein | 116 | — | P63272 |
| Z | — | protein | 488 | — | O00267 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OIK · Structure of an RNA polymerase II-DSIF transcription elongation complex · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5PJW8
- Every structure of UniProt Q3T0Q3
- Every structure of UniProt Q1JQ91
- Every structure of UniProt Q2T9T3
- Every structure of UniProt F2Z4C9
- Every structure of UniProt Q5E9B8
- Every structure of UniProt F2Z4H3
- Every structure of UniProt Q32P73
- Every structure of UniProt Q32P78
- Every structure of UniProt Q32P79
- Every structure of UniProt Q3ZBC0
- Every structure of UniProt P63272
- Every structure of UniProt O00267
- Elsewhere: RCSB PDB 5OIK · PDBe 5OIK · UniProt A5PJW8 · UniProt Q3T0Q3 · UniProt Q1JQ91 · UniProt Q2T9T3 · UniProt F2Z4C9 · UniProt Q5E9B8 · UniProt F2Z4H3 · UniProt Q32P73 · UniProt Q32P78 · UniProt Q32P79 · UniProt Q3ZBC0 · UniProt P63272 · UniProt O00267
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