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MolNFT v1 · #129318 · protein

Crystal structure of chimeric carbonic anhydrase I with 3- (benzylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl) SULFONYL]BENZENESULFONAMIDE

5OGO · Carbonic anhydrase 2: “Crystal structure of chimeric carbonic anhydrase I with 3- (benzylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl)…”. X-ray diffraction, 3 ligands (BCN, WWO, ZN), 2 pockets (best druggability 0.55). MolNFT v1…

PDB
5OGO
Type
protein
Length
258 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Carbonic anhydrase 2
EC
4.2.1.1
UniProt
P00918
Ligands
BCN, WWO, ZN
Pockets
2 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 29% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACarbonic anhydrase 2 (EC 4.2.1.1)protein25815% helix, 29% strandP00918

Ligands and binding sites

  • BCN · Bicine · ligand · 3 copies · chains A
  • WWO · 3-(benzylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl) sulfonyl]benzenesulfonamide · ligand · 2 copies · chains A
  • ZN · Zinc ion · metal · chains A
  • EDO · 1,2-ethanediol · additive · 2 copies · chains A
  • DMS · Dimethyl sulfoxide · additive · chains A
  • PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11590.550.8123WWO
2730.310.7415empty

Compared structures

  • 5OGO · Crystal structure of chimeric carbonic anhydrase I with… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00918 · AlphaFold monomer V2.0 prediction for carbonic anhydrase 2 (P00918) · a predicted model of the same protein · chain A against A, TM-score 0.99

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