MolNFT v1 · #129138 · protein
Crystal structure of glycine binding protein in complex with strychnine
5OBG: “Crystal structure of glycine binding protein in complex with strychnine”. X-ray diffraction, 3 ligands (SY9, NAG, NA). MolNFT v1 #129138 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OBG
- Type
- protein
- Length
- 1,038 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8WSF8
- Ligands
- SY9, NAG, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | — | protein | 206 | — | Q8WSF8 |
| B | — | protein | 208 | — | Q8WSF8 |
| E | — | protein | 212 | — | Q8WSF8 |
Ligands and binding sites
- SY9 · Strychnine · ligand · 5 copies · chains A, B, C, D, E
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains B, C, D, E
- NA · Sodium ion · metal · 5 copies · chains A, B, C, D, E
- EDO · 1,2-ethanediol · additive · 31 copies · chains A, E, B, C, D
- ACT · Acetate ion · additive · 9 copies · chains A, B, E, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OBG · Crystal structure of glycine binding protein in complex with strychnine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WSF8
- Elsewhere: RCSB PDB 5OBG · PDBe 5OBG · UniProt Q8WSF8
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