MolNFT v1 · #129084 · protein
Thebaine 6-O-demethylase (T6ODM) from papaver somniferum in complex with 2-oxoglutarate
5O9W: “Thebaine 6-O-demethylase (T6ODM) from papaver somniferum in complex with 2-oxoglutarate”. X-ray diffraction, 4 ligands (AKG, NI, NA). MolNFT v1 #129084 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O9W
- Type
- protein
- Length
- 356 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D4N500
- Ligands
- AKG, NI, NA, UNX
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 356 | — | D4N500 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · chains A
- NI · Nickel (II) ion · metal · chains A
- NA · Sodium ion · metal · chains A
- UNX · Unknown atom or ion · ion · 6 copies · chains A
- EDO · 1,2-ethanediol · additive · 13 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O9W · Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with 2-oxoglutarate · the same entry in another collection · chain A against A, TM-score 1.00
- D4N500 · AlphaFold monomer V2.0 prediction for thebaine 6-O-demethylase (D4N500) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D4N500
- Elsewhere: RCSB PDB 5O9W · PDBe 5O9W · UniProt D4N500
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