MolNFT v1 · #129013 · protein
Crystal structure of a single chain monellin mutant (Y65R) pH 5.5
5O7Q · Monellin chain B,MONELLIN chain a: “Crystal structure of a single chain monellin mutant (Y65R) pH 5.5”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.57). MolNFT v1 #129013 on GenesisL1: 3D structure, binding…
- PDB
- 5O7Q
- Type
- protein
- Length
- 186 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Monellin chain B,MONELLIN chain a
- UniProt
- P02882, P02881
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Monellin chain B,MONELLIN chain a | protein | 90 | 19% helix, 50% strand | P02882, P02881 |
| B | Monellin chain B,MONELLIN chain a | protein | 96 | 18% helix, 53% strand | P02882, P02881 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.57 | 0.82 | 27 | SO4 |
Interfaces
1 interface between chains.
- A–B · 439 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5O7Q · Crystal structure of a single chain monellin mutant (Y65R) pH 5.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P02882 · AlphaFold monomer V2.0 prediction for monellin chain B (P02882) · a predicted model of the same protein · chain A against A, TM-score 0.51
- P02881 · AlphaFold monomer V2.0 prediction for monellin chain a (P02881) · a predicted model of the same protein · chain A against A, TM-score 0.47
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02882
- Every structure of UniProt P02881
- Elsewhere: RCSB PDB 5O7Q · PDBe 5O7Q · UniProt P02882 · UniProt P02881
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