MolNFT v1 · #128973 · protein
Human NMT1 in complex with myristoyl-CoA and inhibitor imp-1031
5O6J: “Human NMT1 in complex with myristoyl-CoA and inhibitor imp-1031”. X-ray diffraction, 4 ligands (MYA, 9M8, MG). MolNFT v1 #128973 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O6J
- Type
- protein
- Length
- 765 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P30419
- Ligands
- MYA, 9M8, MG, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 382 | — | P30419 |
| B | — | protein | 383 | — | P30419 |
Ligands and binding sites
- MYA · Tetradecanoyl-coa · ligand · 2 copies · chains A, B
- 9M8 · 1-[5-[3-fluoranyl-2-[2-(1,3,5-trimethylpyrazol-4-yl) ethoxy]phenyl]-1-methyl-indazol-3-yl]-~{N},~{N}-dimethyl-methanamine · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O6J · Human NMT1 in complex with myristoyl-CoA and inhibitor IMP-1031 · the same entry in another collection · chain A against A, TM-score 1.00
- P30419 · AlphaFold monomer V2.0 prediction for glycylpeptide N-tetradecanoyltransferase 1 (P30419) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30419
- Elsewhere: RCSB PDB 5O6J · PDBe 5O6J · UniProt P30419
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