MolNFT v1 · #128972 · protein + DNA
Structures and dynamics of mesophilic variants from the homing endonuclease I-dmoi
5O6I: “Structures and dynamics of mesophilic variants from the homing endonuclease I-dmoi”. X-ray diffraction, 2 ligands (MN, CL). MolNFT v1 #128972 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O6I
- Type
- protein + DNA
- Length
- 699 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P21505
- Ligands
- MN, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 191 | — | P21505 |
| C, G, L | — | dna | 25 | — | — |
| D, I, N | — | dna | 25 | — | — |
| F, K | — | protein | 179 | — | P21505 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 6 copies · chains A, C, D, F, G, I, K, L, N
- CL · Chloride ion · ion · 2 copies · chains A, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O6I · Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI · the same entry in another collection · chain N against N, TM-score 1.00
- P21505 · AlphaFold monomer V2.0 prediction for homing endonuclease I-dmoi (P21505) · a predicted model of the same protein · chain F against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21505
- Elsewhere: RCSB PDB 5O6I · PDBe 5O6I · UniProt P21505
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