MolNFT v1 · #128910 · protein
Apo hcgc from methanococcus maripaludis soaked with sah and pyridinol
5O4N: “Apo hcgc from methanococcus maripaludis soaked with sah and pyridinol”. X-ray diffraction, 1 ligand (9KH). MolNFT v1 #128910 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O4N
- Type
- protein
- Length
- 1,049 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6LX54
- Ligands
- 9KH
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 265 | — | Q6LX54 |
| B | — | protein | 261 | — | Q6LX54 |
| C | — | protein | 261 | — | Q6LX54 |
| D | — | protein | 262 | — | Q6LX54 |
Ligands and binding sites
- 9KH · 6-carboxy methyl-4-hydroxy-2-pyridinol · ligand · 4 copies · chains A, B, C, D
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 5 copies · chains A, B, C, D
- DMS · Dimethyl sulfoxide · additive · 4 copies · chains B, D, C, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O4N · Apo HcgC from Methanococcus maripaludis soaked with SAH and pyridinol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6LX54
- Elsewhere: RCSB PDB 5O4N · PDBe 5O4N · UniProt Q6LX54
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