MolNFT v1 · #128834 · protein
Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron crystallography
5O2G · Fluoroacetate dehalogenase: “Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron…”. X-ray diffraction, 3 pockets (best druggability 0.52). MolNFT v1 #128834 on GenesisL1: 3D…
- PDB
- 5O2G
- Type
- protein
- Length
- 592 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluoroacetate dehalogenase
- EC
- 3.8.1.3
- UniProt
- Q6NAM1
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluoroacetate dehalogenase (EC 3.8.1.3) | protein | 296 | 45% helix, 17% strand | Q6NAM1 |
| B | Fluoroacetate dehalogenase (EC 3.8.1.3) | protein | 296 | 45% helix, 16% strand | Q6NAM1 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.52 | 0.79 | 32 | empty |
| 2 | 51 | 0.50 | 0.87 | 17 | empty |
| 3 | 144 | 0.44 | 0.76 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 1201 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5O2G · Crystal structure determination from picosecond infrared laser ablated protein crystals… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6NAM1 · AlphaFold monomer V2.0 prediction for fluoroacetate dehalogenase (Q6NAM1) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NAM1
- Elsewhere: RCSB PDB 5O2G · PDBe 5O2G · UniProt Q6NAM1
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