MolNFT v1 · #128719 · RNA

The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.

5NZ6 · RNA (41-mer): “The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.”. X-ray diffraction, 1 ligand (GAI), 1 pocket (best druggability 0.48). MolNFT v1 #128719 on GenesisL1: 3D…

PDB: 5NZ6
Type: RNA
Length: 41 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (41-mer)
Ligands: GAI
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (41-mer)	rna	41	—	—

Ligands and binding sites

GAI · Guanidine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	136	0.48	0.79	14	GAI

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

5NZ6 · The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5NZ6 · PDBe 5NZ6

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