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The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.

Analyse The structure of the thermobifida fusca guanidine III riboswitch with guanidine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NZ6
Type: RNA
Length: 41 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (41-mer)
Ligands: GAI
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (41-mer)	rna	41	—	—

Ligands and binding sites

GAI · Guanidine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	136	0.48	0.79	14	GAI

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

5NZ6 · The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5NZ6 · PDBe 5NZ6

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