MolNFT v1 · #128327 · protein

The structure of the polo-box domain (pbd) of PLK1 in complex with Z228588490

5NN2 · SERINE/THREONINE-protein kinase PLK1: “The structure of the polo-box domain (pbd) of PLK1 in complex with Z228588490”. X-ray diffraction, 1 ligand (Z24), 2 pockets (best druggability 0.47). MolNFT v1 #128327 on GenesisL1: 3D…

PDB: 5NN2
Type: protein
Length: 218 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SERINE/THREONINE-protein kinase PLK1
EC: 2.7.11.21
UniProt: P53350
Ligands: Z24
Pockets: 2 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SERINE/THREONINE-protein kinase PLK1 (EC 2.7.11.21)	protein	218	30% helix, 30% strand	P53350

Ligands and binding sites

Z24 · (3~{R},5~{R})-1-[2,4-bis(fluoranyl)phenyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	149	0.47	0.77	23	empty
2	50	0.29	0.75	10	empty

Compared structures

5NN2 · The structure of the polo-box domain (PBD) of Plk1 in complex with Z228588490 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P53350
Elsewhere: RCSB PDB 5NN2 · PDBe 5NN2 · UniProt P53350

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