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MolNFT v1 · #128307 · protein

HLA A02 presenting slyntiatl

5NMH: “HLA A02 presenting slyntiatl”. X-ray diffraction. MolNFT v1 #128307 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5NMH
Type
protein
Length
384 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P01892, P61769, W8EGN4

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein276—P01892
B—protein99—P61769
C—protein9—W8EGN4

Ligands and binding sites

  • EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
  • GOL · Glycerol · additive · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5NMH · HLA A02 presenting SLYNTIATL · the same entry in another collection · chain A against A, TM-score 1.00
  • P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.99

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