MolNFT v1 · #128306 · protein

868 TCR in complex with HLA A02 presenting slyfntiavl

5NMG: “868 TCR in complex with HLA A02 presenting slyfntiavl”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #128306 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5NMG
Type: protein
Length: 1,653 residues
Chains: 10
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01892, P61769, W0GUW4
Ligands: SO4

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, F	—	protein	276	—	P01892
B, G	—	protein	100	—	P61769
C, H	—	protein	9	—	W0GUW4
D, I	—	protein	200	—	—
E	—	protein	242	—	—
J	—	protein	241	—	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, D, E, J
EDO · 1,2-ethanediol · additive · 16 copies · chains A, C, D, B, E, G, I, J
GOL · Glycerol · additive · 3 copies · chains A, B, D, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5NMG · 868 TCR in complex with HLA A02 presenting SLYFNTIAVL · the same entry in another collection · chain J against J, TM-score 1.00
P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01892
Every structure of UniProt P61769
Every structure of UniProt W0GUW4
Elsewhere: RCSB PDB 5NMG · PDBe 5NMG · UniProt P01892 · UniProt P61769 · UniProt W0GUW4

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