MolNFT v1 · #128286 · protein

BRAG2 SEC7-pH (390-763)

5NLV · Iq motif and SEC7 domain-containing protein 1: “BRAG2 SEC7-pH (390-763)”. X-ray diffraction, 2 pockets (best druggability 0.49). MolNFT v1 #128286 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5NLV
Type: protein
Length: 347 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Iq motif and SEC7 domain-containing protein 1
UniProt: Q6DN90
Pockets: 2 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Iq motif and SEC7 domain-containing protein 1	protein	347	47% helix, 15% strand	Q6DN90

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	193	0.49	0.76	24	empty
2	110	0.37	0.74	17	empty

Modifications

Observed in the structure: 2 modified (artifact).

Compared structures

5NLV · Brag2 Sec7-PH (390-763) · the same entry in another collection · chain A against A, TM-score 1.00
Q6DN90 · AlphaFold monomer V2.0 prediction for iq motif and SEC7 domain- containing protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6DN90
Elsewhere: RCSB PDB 5NLV · PDBe 5NLV · UniProt Q6DN90

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