MolNFT v1 · #128187 · protein
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and arsenoplatin-1
5NJ1 · Lysozyme C: “The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and arsenoplatin-1”. X-ray diffraction, 3 ligands (A6R, NA, NO3), 1 pocket (best druggability 0.35). MolNFT v1 #128187 on…
- PDB
- 5NJ1
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme C
- EC
- 3.2.1.17
- UniProt
- P00698
- Ligands
- A6R, NA, NO3
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme C (EC 3.2.1.17) | protein | 129 | 41% helix, 12% strand | P00698 |
Ligands and binding sites
- A6R · arsenoplatin-1 · ligand · chains A
- NA · Sodium ion · metal · chains A
- NO3 · Nitrate ion · ion · 5 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.35 | 0.76 | 16 | EDO, NO3 |
Modifications
Observed in the structure: 4 disulfide, 2 modified (disulfide, acetylation).
Compared structures
- 5NJ1 · The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 5NJ1 · PDBe 5NJ1 · UniProt P00698
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.