MolNFT v1 · #128170 · protein
Crystal structure of arabidopsis thaliana legumain isoform gamma in two-chain activation state
5NIJ: “Crystal structure of arabidopsis thaliana legumain isoform gamma in two-chain activation state”. X-ray diffraction, 2 ligands (SNN, SO4). MolNFT v1 #128170 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NIJ
- Type
- protein
- Length
- 1,710 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q39119
- Ligands
- SNN, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 428 | — | Q39119 |
| B | — | protein | 427 | — | Q39119 |
| D | — | protein | 427 | — | Q39119 |
Ligands and binding sites
- SNN · L-3-aminosuccinimide · ligand · 4 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 5 copies · chains A, C, B, D
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NIJ · Crystal structure of arabidopsis thaliana legumain isoform gamma in two-chain activation… · the same entry in another collection · chain C against C, TM-score 1.00
- Q39119 · AlphaFold monomer V2.0 prediction for vacuolar-processing enzyme gamma-isozyme (Q39119) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39119
- Elsewhere: RCSB PDB 5NIJ · PDBe 5NIJ · UniProt Q39119
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.