MolNFT v1 · #128114 · protein
Crystal structure of leuconostoc citreum nrrl B-1299 dextransucrase dsr-M
5NGY: “Crystal structure of leuconostoc citreum nrrl B-1299 dextransucrase dsr-M”. X-ray diffraction, 3 ligands (GLC, PR, CA). MolNFT v1 #128114 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NGY
- Type
- protein
- Length
- 2,409 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- GLC, PR, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1265 | — | — |
| B | — | protein | 1144 | — | — |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 4 copies · chains A
- PR · Praseodymium ion · metal · 6 copies · chains A
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NGY · Crystal structure of Leuconostoc citreum NRRL B-1299 dextransucrase DSR-M · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5NGY · PDBe 5NGY
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