MolNFT v1 · #128099 · protein
Structure of odorant binding protein 3 from giant panda (ailuropoda melanoleuca)
5NGH: “Structure of odorant binding protein 3 from giant panda (ailuropoda melanoleuca)”. X-ray diffraction, 1 pocket (best druggability 0.83). MolNFT v1 #128099 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NGH
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Odorant binding protein 3
- UniProt
- G1LK14
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Odorant binding protein 3 | protein | 162 | 14% helix, 44% strand | G1LK14 |
Ligands and binding sites
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.83 | 0.98 | 20 | TRS |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5NGH · Structure of Odorant Binding Protein 3 from Giant Panda (Ailuropoda melanoleuca) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G1LK14
- Elsewhere: RCSB PDB 5NGH · PDBe 5NGH · UniProt G1LK14
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