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Structure of odorant binding protein 3 from giant panda (ailuropoda melanoleuca)

Analyse Structure of odorant binding protein 3 from giant panda (ailuropoda melanoleuca) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5NGH
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Odorant binding protein 3
UniProt: G1LK14
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Odorant binding protein 3	protein	162	14% helix, 44% strand	G1LK14

Ligands and binding sites

TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	151	0.83	0.98	20	TRS

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5NGH · Structure of Odorant Binding Protein 3 from Giant Panda (Ailuropoda melanoleuca) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G1LK14
Elsewhere: RCSB PDB 5NGH · PDBe 5NGH · UniProt G1LK14

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