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MolNFT v1 · #128071 · protein

Crystal structure of yrba from sinorhizobium meliloti in complex with copper.

5NFM: “Crystal structure of yrba from sinorhizobium meliloti in complex with copper.”. X-ray diffraction, 2 ligands (LI, CU). MolNFT v1 #128071 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5NFM
Type
protein
Length
75 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Yrba
UniProt
M4MWA0
Ligands
LI, CU

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 24% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AYrbaprotein7541% helix, 24% strandM4MWA0

Ligands and binding sites

  • LI · Lithium ion · metal · chains A
  • CU · Copper (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5NFM · Crystal structure of YrbA from Sinorhizobium meliloti in complex with copper. · the same entry in another collection · chain A against A, TM-score 1.00

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