MolNFT v1 · #128023 · protein
Crystal structure of H60A H307A mutant of thermotoga maritima TMPEP1050 aminopeptidase
5NE9: “Crystal structure of H60A H307A mutant of thermotoga maritima TMPEP1050 aminopeptidase”. X-ray diffraction, 4 pockets (best druggability 0.59). MolNFT v1 #128023 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NE9
- Type
- protein
- Length
- 616 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aminopeptidase
- EC
- 3.4.11.1
- UniProt
- Q9X0E0
- Pockets
- 4 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aminopeptidase (EC 3.4.11.1) | protein | 306 | 25% helix, 29% strand | Q9X0E0 |
| B | Aminopeptidase (EC 3.4.11.1) | protein | 310 | 27% helix, 28% strand | Q9X0E0 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 328 | 0.59 | 0.77 | 51 | empty |
| 2 | 275 | 0.56 | 0.77 | 40 | empty |
| 3 | 215 | 0.47 | 0.74 | 29 | empty |
| 4 | 180 | 0.45 | 0.75 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 564 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5NE9 · Crystal structure of H60A H307A mutant of Thermotoga maritima TmPEP1050 aminopeptidase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X0E0
- Elsewhere: RCSB PDB 5NE9 · PDBe 5NE9 · UniProt Q9X0E0
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