MolNFT v1 · #12781 · protein

NMR solution structures of the rhesus rotavirus VP4 sialic acid binding domain without ligand

1KRI: “NMR solution structures of the rhesus rotavirus VP4 sialic acid binding domain without ligand”. Solution nmr, 1 pocket (best druggability 0.63). MolNFT v1 #12781 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1KRI
Type: protein
Length: 160 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: VP4
UniProt: P12473
Pockets: 1 · best druggability 0.63

Structure

solution nmr · 1 distinct chain · 10% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	VP4	protein	160	10% helix, 54% strand	P12473

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	137	0.63	0.86	37	empty

Compared structures

1KRI · NMR Solution Structures of the Rhesus Rotavirus VP4 Sialic Acid Binding Domain without… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12473
Elsewhere: RCSB PDB 1KRI · PDBe 1KRI · UniProt P12473

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