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NMR solution structures of the rhesus rotavirus VP4 sialic acid binding domain without ligand

Analyse NMR solution structures of the rhesus rotavirus VP4 sialic acid binding domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1KRI
Type: protein
Length: 160 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: VP4
UniProt: P12473
Pockets: 1 · best druggability 0.63

Structure

solution nmr · 1 distinct chain · 10% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	VP4	protein	160	10% helix, 54% strand	P12473

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	137	0.63	0.86	37	empty

Compared structures

1KRI · NMR Solution Structures of the Rhesus Rotavirus VP4 Sialic Acid Binding Domain without… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12473
Elsewhere: RCSB PDB 1KRI · PDBe 1KRI · UniProt P12473

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