Thermotoga maritima family 1 glycoside hydrolase complexed with carba- cyclophellitol transition state mimic

Structure

x-ray diffraction · 3 distinct chains.

Ligands and binding sites

• 8P5 · Azanylidene-[4-[[(1~{S},2~{R},3~{R},4~{R},5~{S},6~{S}, 7~{S})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)-7-bicyclo[4.1.0]heptanyl]carbonylamino]butylimino]azaniu M · ligand · 4 copies · chains A, B, C, D
• CL · Chloride ion · ion · 6 copies · chains A, B, C, D
• EDO · 1,2-ethanediol · additive · 18 copies · chains A, B, C, D
• PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
• ACT · Acetate ion · additive · 2 copies · chains B, C
• IMD · Imidazole · additive · chains A
• PGE · Triethylene glycol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 5N6S · Thermotoga maritima family 1 Glycoside hydrolase complexed with Carba-Cyclophellitol… · the same entry in another collection · chain D against D, TM-score 1.00
• Q08638 · AlphaFold monomer V2.0 prediction for beta-glucosidase a (Q08638) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q08638
• Elsewhere: RCSB PDB 5N6S · PDBe 5N6S · UniProt Q08638