MolNFT v1 · #127730 · protein
Di-zinc vim-5 metallo-beta-lactamase in complex with (1-chloro-4- hydroxyisoquinoline-3-carbonyl)-D-tryptophan (compound 1)
5N58: “Di-zinc vim-5 metallo-beta-lactamase in complex with (1-chloro-4…”. X-ray diffraction, 2 ligands (93W, ZN). MolNFT v1 #127730 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5N58
- Type
- protein
- Length
- 439 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8GKX2
- Ligands
- 93W, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 220 | — | Q8GKX2 |
| B | — | protein | 219 | — | Q8GKX2 |
Ligands and binding sites
- 93W · (2~{R})-2-[(1-chloranyl-4-oxidanyl-isoquinolin-3-yl) carbonylamino]-3-(1~{H}-indol-3-yl)propanoic acid · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 3 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5N58 · di-Zinc VIM-5 metallo-beta-lactamase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8GKX2
- Elsewhere: RCSB PDB 5N58 · PDBe 5N58 · UniProt Q8GKX2
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