MolNFT v1 · #127688 · protein
The structure of the complex of cpce and cpcf of phycocyanin lyase from nostoc sp. PCC7120
5N3U · Phycocyanobilin lyase subunit alpha: “The structure of the complex of cpce and cpcf of phycocyanin lyase from nostoc sp. PCC7120”. X-ray diffraction, 2 pockets (best druggability 0.78). MolNFT v1 #127688 on GenesisL1: 3D structure…
- PDB
- 5N3U
- Type
- protein
- Length
- 436 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phycocyanobilin lyase subunit alpha; Phycocyanobilin lyase subunit beta
- EC
- 4.-.-.-
- UniProt
- P07125, P29985
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phycocyanobilin lyase subunit alpha (EC 4.-.-.-) | protein | 266 | 67% helix, 0% strand | P07125 |
| B | Phycocyanobilin lyase subunit beta (EC 4.-.-.-) | protein | 170 | 79% helix, 0% strand | P29985 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1185 | 0.78 | 0.80 | 91 | empty |
| 2 | 66 | 0.48 | 0.84 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1314 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 5N3U · The structure of the complex of CpcE and CpcF of phycocyanin lyase from Nostoc sp. PCC7120 · the same entry in another collection · chain A against A, TM-score 1.00
- P29985 · AlphaFold monomer V2.0 prediction for phycocyanobilin lyase subunit beta (P29985) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P07125 · AlphaFold monomer V2.0 prediction for phycocyanobilin lyase subunit alpha (P07125) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07125
- Every structure of UniProt P29985
- Elsewhere: RCSB PDB 5N3U · PDBe 5N3U · UniProt P07125 · UniProt P29985
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