Research workbench
The structure of the complex of cpce and cpcf of phycocyanin lyase from nostoc sp. PCC7120
Analyse The structure of the complex of cpce and cpcf of phycocyanin lyase from nostoc… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5N3U
- Type
- protein
- Length
- 436 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phycocyanobilin lyase subunit alpha; Phycocyanobilin lyase subunit beta
- EC
- 4.-.-.-
- UniProt
- P07125, P29985
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phycocyanobilin lyase subunit alpha (EC 4.-.-.-) | protein | 266 | 67% helix, 0% strand | P07125 |
| B | Phycocyanobilin lyase subunit beta (EC 4.-.-.-) | protein | 170 | 79% helix, 0% strand | P29985 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1185 | 0.78 | 0.80 | 91 | empty |
| 2 | 66 | 0.48 | 0.84 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1314 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 5N3U · The structure of the complex of CpcE and CpcF of phycocyanin lyase from Nostoc sp. PCC7120 · the same entry in another collection · chain A against A, TM-score 1.00
- P29985 · AlphaFold monomer V2.0 prediction for phycocyanobilin lyase subunit beta (P29985) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P07125 · AlphaFold monomer V2.0 prediction for phycocyanobilin lyase subunit alpha (P07125) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07125
- Every structure of UniProt P29985
- Elsewhere: RCSB PDB 5N3U · PDBe 5N3U · UniProt P07125 · UniProt P29985
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