MolNFT v1 · #127590 · protein
Second bromodomain (BD2) from candida albicans BDF1 in the unbound form
5N13 · Bromodomain-containing factor 1: “Second bromodomain (BD2) from candida albicans BDF1 in the unbound form”. X-ray diffraction, 1 pocket (best druggability 0.47). MolNFT v1 #127590 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5N13
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bromodomain-containing factor 1
- UniProt
- Q5A4W8
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bromodomain-containing factor 1 | protein | 108 | 68% helix, 0% strand | Q5A4W8 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.47 | 0.82 | 17 | GOL |
Compared structures
- 5N13 · Second Bromodomain (BD2) from Candida albicans Bdf1 in the unbound form · the same entry in another collection · chain A against A, TM-score 1.00
- Q5A4W8 · AlphaFold monomer V2.0 prediction for bromodomain-containing factor 1 (Q5A4W8) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5A4W8
- Elsewhere: RCSB PDB 5N13 · PDBe 5N13 · UniProt Q5A4W8
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