MolNFT v1 · #127541 · protein

X-ray structure of the M205W mutant of glic in complex with bromoform

5MZQ: “X-ray structure of the M205W mutant of glic in complex with bromoform”. X-ray diffraction, 6 ligands (D12, PC8, 2IL). MolNFT v1 #127541 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MZQ
Type: protein
Length: 1,555 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q7NDN8
Ligands: D12, PC8, 2IL, MBR, NA, CL

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	—	protein	311	—	Q7NDN8

Ligands and binding sites

D12 · Dodecane · ligand · 11 copies · chains A, B, E, C, D
PC8 · 1,2-dioctanoyl-sn-glycero-3-phosphocholine · ligand · 5 copies · chains A, B, C, D, E
2IL · (3R)-3-(dodecanoyloxy)tetradecanoic acid · ligand · 5 copies · chains A, B, C, D, E
MBR · Tribromomethane · ligand · 5 copies · chains A, B, C, D, E
NA · Sodium ion · metal · 6 copies · chains A, B, C, D, E
CL · Chloride ion · ion · 7 copies · chains A, B, C, D, E
ACT · Acetate ion · additive · 10 copies · chains A, E, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5MZQ · X-ray structure of the M205W mutant of GLIC in complex with bromoform · the same entry in another collection · chain E against E, TM-score 1.00
Q7NDN8 · AlphaFold monomer V2.0 prediction for proton-gated ion channel (Q7NDN8) · a predicted model of the same protein · chain D against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7NDN8
Elsewhere: RCSB PDB 5MZQ · PDBe 5MZQ · UniProt Q7NDN8

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