MolNFT v1 · #127468 · protein

Photorhabdus asymbiotica lectin (phl) in complex with blood group H trisaccharide

5MXG · Photorhabdus asymbiotica lectin phl: “Photorhabdus asymbiotica lectin (phl) in complex with blood group H trisaccharide”. X-ray diffraction, 4 ligands (NAG, GAL, FUC), 1 pocket (best druggability 0.79). MolNFT v1 #127468 on…

PDB: 5MXG
Type: protein
Length: 344 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Photorhabdus asymbiotica lectin phl
UniProt: C7BLE4
Ligands: NAG, GAL, FUC, NA
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photorhabdus asymbiotica lectin phl	protein	344	0% helix, 48% strand	C7BLE4

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
GAL · beta-D-galactopyranose · sugar · 3 copies · chains A
FUC · alpha-L-fucopyranose · sugar · 3 copies · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	625	0.79	0.84	39	NA

Compared structures

5MXG · Photorhabdus asymbiotica lectin (PHL) in complex with blood group H trisaccharide · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7BLE4
Elsewhere: RCSB PDB 5MXG · PDBe 5MXG · UniProt C7BLE4

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