MolNFT v1 · #127325 · protein
Crystal structure of pdf from the vibrio parahaemolyticus bacteriophage VP16T - crystal form II
5MTD: “Crystal structure of pdf from the vibrio parahaemolyticus bacteriophage VP16T - crystal form II”. X-ray diffraction, 2 ligands (NI, ZN). MolNFT v1 #127325 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MTD
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6VT21
- Ligands
- NI, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 137 | — | Q6VT21 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 3 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- PGE · Triethylene glycol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MTD · Crystal structure of PDF from the Vibrio parahaemolyticus bacteriophage VP16T - crystal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VT21
- Elsewhere: RCSB PDB 5MTD · PDBe 5MTD · UniProt Q6VT21
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