MolNFT v1 · #127217 · protein
Crystal structure of arabidopsis thaliana RNA editing factor MORF9
5MPY · Multiple organellar RNA editing factor 9, chloroplastic: “Crystal structure of arabidopsis thaliana RNA editing factor MORF9”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.56). MolNFT v1 #127217 on GenesisL1: 3D…
- PDB
- 5MPY
- Type
- protein
- Length
- 202 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multiple organellar RNA editing factor 9, chloroplastic
- UniProt
- Q9LPZ1
- Ligands
- CA
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Multiple organellar RNA editing factor 9, chloroplastic | protein | 101 | 32% helix, 27% strand | Q9LPZ1 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.56 | 0.77 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 711 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5MPY · Crystal structure of Arabidopsis thaliana RNA editing factor MORF9 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LPZ1 · AlphaFold monomer V2.0 prediction for multiple organellar RNA editing factor 9… · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LPZ1
- Elsewhere: RCSB PDB 5MPY · PDBe 5MPY · UniProt Q9LPZ1
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