MolNFT v1 · #127165 · protein
Ethylene forming enzyme from pseudomonas syringae pv. phaseolicola - I222 crystal form in complex with manganese and 2-oxoglutarate
5MOF · 2-oxoglutarate-dependent ETHYLENE/SUCCINATE-forming enzyme: “Ethylene forming enzyme from pseudomonas syringae pv. phaseolicola - I222 crystal form in complex with…”. X-ray diffraction, 3 ligands (AKG, MN, CL), 2 pockets (best…
- PDB
- 5MOF
- Type
- protein
- Length
- 343 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2-oxoglutarate-dependent ETHYLENE/SUCCINATE-forming enzyme
- EC
- 1.13.12.19, 1.14.11.34
- UniProt
- P32021
- Ligands
- AKG, MN, CL
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2-oxoglutarate-dependent ETHYLENE/SUCCINATE-forming enzyme (EC 1.13.12.19, 1.14.11.34) | protein | 343 | 31% helix, 19% strand | P32021 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · 2 copies · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 412 | 0.76 | 0.85 | 65 | MN, CL, AKG |
| 2 | 141 | 0.44 | 0.76 | 20 | empty |
Compared structures
- 5MOF · Ethylene Forming Enzyme from Pseudomonas syringae pv. phaseolicola - I222 crystal form in… · the same entry in another collection · chain A against A, TM-score 1.00
- P32021 · AlphaFold monomer V2.0 prediction for 2-oxoglutarate-dependent ETHYLENE/SUCCINATE-forming… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32021
- Elsewhere: RCSB PDB 5MOF · PDBe 5MOF · UniProt P32021
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