MolNFT v1 · #127048 · protein
The crystal structure of PDE6D in complex to inhibitor-7
5ML4: “The crystal structure of PDE6D in complex to inhibitor-7”. X-ray diffraction, 1 ligand (RRQ). MolNFT v1 #127048 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ML4
- Type
- protein
- Length
- 149 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O43924
- Ligands
- RRQ
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 149 | — | O43924 |
Ligands and binding sites
- RRQ · 4-[[[4-[(4-chlorophenyl)methyl-cyclopentyl-sulfamoyl]phenyl]sulfonyl-(piperidin-4-ylmethyl) amino]methyl]-2-(methylamino)benzoic acid · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ML4 · The crystal structure of PDE6D in complex to inhibitor-7 · the same entry in another collection · chain B against B, TM-score 1.00
- O43924 · AlphaFold monomer V2.0 prediction for retinal rod rhodopsin-sensitive cgmp 3',5'-cyclic… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O43924
- Elsewhere: RCSB PDB 5ML4 · PDBe 5ML4 · UniProt O43924
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