MolNFT v1 · #127003 · protein
Thrombin mutant A190S in complex with (S) -1 - ((R) -2-amino-3,3- diphenylpropanoyl) -N- (3-chlorobenzyl) pyrrolidine-2-carboxamide
5MJT: “Thrombin mutant A190S in complex with (S) -1 - ((R) -2-amino-3,3- diphenylpropanoyl) -N- (3-chlorobenzyl)…”. X-ray diffraction, 3 ligands (23U, NA, PO4). MolNFT v1 #127003 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5MJT
- Type
- protein
- Length
- 292 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00734, P09945
- Ligands
- 23U, NA, PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 31 | — | P00734 |
| H | — | protein | 250 | — | P00734 |
| D | — | protein | 11 | — | P09945 |
Ligands and binding sites
- 23U · beta-phenyl-D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide · ligand · chains H
- NA · Sodium ion · metal · 2 copies · chains H
- PO4 · Phosphate ion · ion · chains H
- GOL · Glycerol · additive · 5 copies · chains H
- DMS · Dimethyl sulfoxide · additive · chains H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MJT · Thrombin Mutant A190S in complex with (S) -1 - ((R) -2-amino-3,3-diphenylpropanoyl) -N… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00734
- Every structure of UniProt P09945
- Elsewhere: RCSB PDB 5MJT · PDBe 5MJT · UniProt P00734 · UniProt P09945
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