MolNFT v1 · #126998 · protein

Structure of PSB29 at 1.55A

5MJO · Protein THF1: “Structure of PSB29 at 1.55A”. X-ray diffraction, 2 ligands (HG, IOD), 2 pockets (best druggability 0.53). MolNFT v1 #126998 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MJO
Type: protein
Length: 186 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein THF1
UniProt: Q8DJT8
Ligands: HG, IOD
Pockets: 2 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 66% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein THF1	protein	186	66% helix, 0% strand	Q8DJT8

Ligands and binding sites

HG · Mercury (II) ion · metal · chains A
IOD · Iodide ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	157	0.53	0.79	19	empty
2	50	0.46	0.85	16	empty

Compared structures

5MJO · Structure of Psb29 at 1.55A · the same entry in another collection · chain A against A, TM-score 1.00
Q8DJT8 · AlphaFold monomer V2.0 prediction for protein THF1 (Q8DJT8) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DJT8
Elsewhere: RCSB PDB 5MJO · PDBe 5MJO · UniProt Q8DJT8

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