MolNFT v1 · #126961 · protein
X-ray structure of carboplatin-encapsulated horse spleen apoferritin (rotating anode data)
5MIK · Ferritin light chain: “X-ray structure of carboplatin-encapsulated horse spleen apoferritin (rotating anode data)”. X-ray diffraction, 4 ligands (CD, PT, CL), 1 pocket (best druggability 0.33). MolNFT v1 #126961 on GenesisL1: 3D…
- PDB
- 5MIK
- Type
- protein
- Length
- 173 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin light chain
- UniProt
- P02791
- Ligands
- CD, PT, CL, SO4
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferritin light chain | protein | 173 | 75% helix, 0% strand | P02791 |
Ligands and binding sites
- CD · Cadmium ion · metal · 11 copies · chains A
- PT · Platinum (II) ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 3 copies · chains A
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.33 | 0.75 | 18 | empty |
Compared structures
- 5MIK · X-ray structure of carboplatin-encapsulated horse spleen apoferritin (rotating anode data) · the same entry in another collection · chain A against A, TM-score 1.00
- P02791 · AlphaFold monomer V2.0 prediction for ferritin light chain (P02791) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02791
- Elsewhere: RCSB PDB 5MIK · PDBe 5MIK · UniProt P02791
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