MolNFT v1 · #126901 · protein
Complex of human nkr-P1 and LLT1 in deglycosylated forms
5MGT: “Complex of human nkr-P1 and LLT1 in deglycosylated forms”. X-ray diffraction, 3 ligands (NAG, SO4, CL). MolNFT v1 #126901 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MGT
- Type
- protein
- Length
- 735 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UHP7, Q12918
- Ligands
- NAG, SO4, CL
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 116 | — | Q9UHP7 |
| B | — | protein | 116 | — | Q9UHP7 |
| C | — | protein | 127 | — | Q12918 |
| D, F | — | protein | 125 | — | Q12918 |
| E | — | protein | 126 | — | Q12918 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains A, B, C, D, E, F
- SO4 · Sulfate ion · ion · 7 copies · chains A, B, C, D, F
- CL · Chloride ion · ion · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MGT · Complex of human NKR-P1 and LLT1 in deglycosylated forms · the same entry in another collection · chain F against F, TM-score 1.00
- Q9UHP7 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 2 member D (Q9UHP7) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q12918 · AlphaFold monomer V2.0 prediction for killer cell lectin-like receptor subfamily B member… · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UHP7
- Every structure of UniProt Q12918
- Elsewhere: RCSB PDB 5MGT · PDBe 5MGT · UniProt Q9UHP7 · UniProt Q12918
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