MolNFT v1 · #126900 · protein
Human receptor nkr-P1 in deglycosylated form, extracellular domain
5MGS: “Human receptor nkr-P1 in deglycosylated form, extracellular domain”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #126900 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MGS
- Type
- protein
- Length
- 1,005 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q12918
- Ligands
- NAG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F, G | — | protein | 124 | — | Q12918 |
| B | — | protein | 128 | — | Q12918 |
| C | — | protein | 126 | — | Q12918 |
| D, E | — | protein | 125 | — | Q12918 |
| H | — | protein | 129 | — | Q12918 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 16 copies · chains A, B, C, D, E, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MGS · Human receptor NKR-P1 in deglycosylated form, extracellular domain · the same entry in another collection · chain H against H, TM-score 1.00
- Q12918 · AlphaFold monomer V2.0 prediction for killer cell lectin-like receptor subfamily B member… · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12918
- Elsewhere: RCSB PDB 5MGS · PDBe 5MGS · UniProt Q12918
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