MolNFT v1 · #126887 · protein

Structure of E298Q-beta-galactosidase from aspergillus niger in complex with 6-galactosyl-lactose

5MGD: “Structure of E298Q-beta-galactosidase from aspergillus niger in complex with 6-galactosyl-lactose”. X-ray diffraction, 6 ligands (MAN, NAG, BMA). MolNFT v1 #126887 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MGD
Type: protein
Length: 968 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A2QAN3
Ligands: MAN, NAG, BMA, GAL, GLC, CL

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	968	—	A2QAN3

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 15 copies · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains A
BMA · beta-D-mannopyranose · sugar · 3 copies · chains A
GAL · beta-D-galactopyranose · sugar · 2 copies · chains A
GLC · alpha-D-glucopyranose · sugar · chains A
CL · Chloride ion · ion · chains A
DMS · Dimethyl sulfoxide · additive · chains A
1PE · Pentaethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5MGD · STRUCTURE OF E298Q-BETA-GALACTOSIDASE FROM ASPERGILLUS NIGER IN COMPLEX WITH… · the same entry in another collection · chain A against A, TM-score 1.00
A2QAN3 · AlphaFold monomer V2.0 prediction for beta-galactosidase a (A2QAN3) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A2QAN3
Elsewhere: RCSB PDB 5MGD · PDBe 5MGD · UniProt A2QAN3

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