MolNFT v1 · #12681 · RNA
RNA aptamer complexed with arginine, NMR
1KOC · RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*CP*GP*U)-3'): “RNA aptamer complexed with arginine, NMR”. Solution nmr, 1 ligand (ARG). MolNFT v1 #12681 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1KOC
- Type
- RNA
- Length
- 25 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*CP*GP*U)-3'); RNA…
- Ligands
- ARG
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*CP*GP*U)-3') | rna | 11 | — | — |
| B | RNA (5'-R(P*AP*CP*AP*GP*GP*UP*AP*GP*GP*UP*CP*GP*CP*U)-3') | rna | 14 | — | — |
Ligands and binding sites
- ARG · Arginine · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 667 Ų buried · 60 hydrogen bonds · nucleic-nucleic
Compared structures
- 1KOC · RNA aptamer complexed with arginine, NMR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KOC · PDBe 1KOC
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